Structure

DNA A(Me) amidite

CAS
105931-58-6
Catalog Number
ACM105931586-1
Category
Amidites
Molecular Weight
767.85
Molecular Formula
C41H50N7O6P

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Specification

Synonyms
N6-Methyl-dA phosphoramidite; (2R,3S,5R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-5-(6-(methylamino)-9H-purin-9-yl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite
IUPAC Name
3-[[(2R,3S,5R)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-5-[6-(methylamino)purin-9-yl]oxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile
SMILES
CC(N(C(C)C)P(O[C@@H]1[C@@H](COC(C2=CC=C(OC)C=C2)(C3=CC=C(OC)C=C3)C4=CC=CC=C4)O[C@@H](N5C=NC6=C(NC)N=CN=C56)C1)OCCC#N)C
InChI
1S/C41H50N7O6P/c1-28(2)48(29(3)4)55(52-23-11-22-42)54-35-24-37(47-27-46-38-39(43-5)44-26-45-40(38)47)53-36(35)25-51-41(30-12-9-8-10-13-30,31-14-18-33(49-6)19-15-31)32-16-20-34(50-7)21-17-32/h8-10,12-21,26-29,35-37H,11,23-25H2,1-7H3,(H,43,44,45)/t35-,36+,37+,55?/m0/s1
InChI Key
PTWRBAYAPDVZGR-JNTXQERPSA-N
Storage
Keep in dark place, inert atmosphere, store in freezer, under -20°C
Complexity
1160
Covalently-Bonded Unit Count
1
Defined Atom Stereocenter Count
3
Defined Bond Stereocenter Count
0
Formal Charge
0
H-Bond Acceptor
12
H-Bond Donor
1
Heavy Atom Count
55
Isomeric SMILES
CC(C)N(C(C)C)P(OCCC#N)O[C@H]1C[C@@H](O[C@@H]1COC(C2=CC=CC=C2)(C3=CC=C(C=C3)OC)C4=CC=C(C=C4)OC)N5C=NC6=C(N=CN=C65)NC
MDL Number
MFCD10686973
PubChem ID
86280297
Rotatable Bond Count
18
Undefined Atom Stereocenter Count
1
Undefined Bond Stereocenter Count
0

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